Background: Most differentiating cells are arrested in G1-phase of the cell cycle and this proliferative quiescence appears important to allow differentiation programmes to be executed. An example occurs in the Drosophila eye imaginal disc, where all cells are synchronized and arrested in G1 phase prior to making a fate choice either to...
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November 27, 2014 (v1)PublicationUploaded on: March 27, 2023
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October 13, 2015 (v1)Publication
Live imaging has revolutionized the analysis of developmental biology over the last few years. The ability to track in real time the dynamic processes that occur at tissue and cellular levels gives a much clearer view of development, and allows greater temporal resolution, than is possible with fixed tissue. Drosophila imaginal discs are a...
Uploaded on: December 4, 2022 -
April 11, 2017 (v1)Publication
The motor protein non-muscle myosin II is a major driver of the movements that sculpt three dimensional organs from two dimensional epithelia. The machinery of morphogenesis is well established but the logic of its control remains unclear in complex organs. Here we use live imaging and ex vivo culture to report a dual role of myosin II in...
Uploaded on: March 27, 2023 -
March 14, 2022 (v1)Publication
Self-organization is an all-important feature of living systems that provides the means to achieve specialization and functionality at distinct spatio-temporal scales. Herein, we review this concept by addressing the packing organization of cells, the sorting/compartmentalization phenomenon of cell populations, and the propagation of organizing...
Uploaded on: December 4, 2022 -
July 1, 2019 (v1)Publication
In this work, we develop a method for detecting differences in the topological distribution of cells forming epithelial tissues. In particular, we extract topological information from their images using persistent homology and a summary statistic called persistent entropy. This method is scale invariant, robust to noise and sensitive to global...
Uploaded on: March 27, 2023 -
July 1, 2019 (v1)Publication
In this paper, we apply persistent entropy, a novel topological statis- tic, for characterization of images of epithelial tissues. We have found out that persistent entropy is able to summarize topological and geomet- ric information encoded by -complexes and persistent homology. After using some statistical tests, we can guarantee the...
Uploaded on: December 4, 2022 -
March 29, 2017 (v1)Publication
Morphogenesis is consequence of lots of small coordinated variations that occur during development. In proliferating stages, tissue growth is coupled to changes in shape and organization. A number of studies have analyzed the topological properties of proliferating epithelia using the Drosophila wing disc as a model. These works are based in...
Uploaded on: December 5, 2022 -
March 23, 2022 (v1)Publication
Laser-based sources of ionizing radiation have attracted considerable attention in the last years for their broad potential applications. However, the stability and robustness of such sources are still issues that need to be addressed. Aiming to solve such problems, we propose a source that uses a liquid jet—rather than a solid—as a target for...
Uploaded on: March 25, 2023 -
September 23, 2021 (v1)Publication
Understanding the cellular organization of tissues is key to developmental biology. In order to deal with this complex problem, researchers have taken advantage of reductionist approaches to reveal fundamental morphogenetic mechanisms and quantitative laws. For epithelia, their two-dimensional representation as polygonal tessellations has...
Uploaded on: March 25, 2023 -
April 7, 2017 (v1)Publication
Cells have the capacity to convert mechanical stimuli into chemical changes. This process is based on the tensegrity principle, a mechanism of tensional integrity. To date, this principle has been demonstrated to act in physiological processes such as mechanotransduction and mechanosensing at different scales (from cell sensing through...
Uploaded on: March 27, 2023 -
March 29, 2017 (v1)Publication
Natural packed tissues are assembled as tessellations of polygonal cells. These include skeletal muscles and epithelial sheets. Skeletal muscles appear as a mosaic composed of two different types of cells: the "slow" and "fast" fibres. Their relative distribution is important for the muscle function but little is known about how the fibre...
Uploaded on: March 27, 2023 -
March 8, 2022 (v1)Publication
Morphogenesis is driven by small cell shape changes that modulate tissue organization. Apical surfaces of proliferating epithelial sheets have been particularly well studied. Currently, it is accepted that a stereotyped distribution of cellular polygons is conserved in proliferating tissues among metazoans. In this work, we challenge these...
Uploaded on: March 1, 2023 -
February 10, 2022 (v1)Publication
Tumors are complex networks of constantly interacting elements: tumor cells, stromal cells, immune and stem cells, blood/lympathic vessels, nerve fibers and extracellular matrix components. These elements can influence their microenvironment through mechanical and physical signals to promote tumor cell growth. To get a better understanding...
Uploaded on: December 5, 2022 -
January 14, 2015 (v1)Publication
Substantia nigra pars compacta (SNpc) is highly sensitive to normal aging and selectively degenerates in Parkinson's disease (PD). Until now, molecular mechanisms behind SNpc aging have not been fully investigated using high throughput techniques. Here, we show early signs of aging in SNpc, which are more evident than in ventral tegmental area...
Uploaded on: March 27, 2023 -
April 6, 2017 (v1)Publication
Diagnosis of neuromuscular diseases is based on subjective visual assessment of biopsies from patients by the pathologist specialist. A system for objective analysis and classification of muscular dystrophies and neurogenic atrophies through muscle biopsy images of fluorescence microscopy is presented. The procedure starts with an accurate...
Uploaded on: March 27, 2023 -
April 7, 2017 (v1)Publication
The emergence of differences in the arrangement of cells is the first step towards the establishment of many organs. Understanding this process is limited by the lack of systematic characterization of epithelial organisation. Here we apply network theory at the scale of individual cells to uncover patterns in cell-to-cell contacts that govern...
Uploaded on: March 27, 2023 -
August 10, 2018 (v1)Publication
Duchenne muscle dystrophy (DMD) is a genetic disorder characterized by progressive skeletal muscle weakness. Dystrophin deficiency induces instability of the sarcolemma during muscle contraction that leads to muscle necrosis and replacement of muscle by fibro-adipose tissue. Several therapies have been developed to counteract the fibrotic...
Uploaded on: December 4, 2022 -
February 27, 2015 (v1)Publication
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Uploaded on: December 4, 2022 -
March 29, 2017 (v1)Publication
Ataxia telangiectasia is caused by mutations in ATM and represents a paradigm for cancer predisposition and neurodegenerative syndromes linked to deficiencies in the DNA-damage response. The role of ATM as a key regulator of signalling following DNA double-strand breaks (DSBs) has been dissected in extraordinary detail, but the impact of this...
Uploaded on: December 5, 2022