Time scales available to biomolecular simulations are limited by barriers among states in a high-dimensional configuration space. If equilibrium averages are to be computed, methods that accelerate barrier passage can be carried out by non-Boltzmann sampling. Barriers can be reduced by modifying the potential-energy function and running...
-
April 28, 2020 (v1)PublicationUploaded on: March 25, 2023
-
August 18, 2023 (v1)Publication
A study of the effect of thermal dissipation on quantum reinforcement learning is performed. For this purpose, a nondissipative quantum reinforcement learning protocol is adapted to the presence of thermal dissipation. Analytical calculations as well as numerical simulations are carried out, obtaining evidence that dissipation does not...
Uploaded on: October 11, 2023 -
November 27, 2014 (v1)Publication
Se ha realizado un estudio crítico de las principales teorías estocásticas para el estudio de fenómenos de transporte en sistemas no lineales. A continuación se aborda el problema de fundamentar mediante un estudio mecánico - estadístico las teorías fenom
Uploaded on: December 4, 2022 -
March 28, 2017 (v1)Publication
We present a procedure to systematically evaluate all the moments of the Fokker-Planck equation by expanding them in a power series in a given function of t. The expansion coefficients are easily determined in terms of algebraic recursion relations. Applications to a linear Fokker-Planck equation, as well as to a truly nonlinear mean-field...
Uploaded on: March 27, 2023 -
March 28, 2017 (v1)Publication
An iterative method to generate a discrete path integral solution of the Kramers problem is presented. It is based on a straightforward derivation of the functional formalism from the underlying Langevin equations. The method is rather simple and systematic and allows us to analytically evaluate the short time propagator up to and including...
Uploaded on: December 5, 2022 -
May 8, 2017 (v1)Publication
We investigate strong-external-field effects on optical transitions between electronic states of charge-transfer systems in condensed media. We will use as a model a two-level system coupled to a dissipative medium driven by a strong, time-dependent external field. The external field induces transitions between the levels, and the dissipation,...
Uploaded on: March 27, 2023 -
April 29, 2020 (v1)Publication
We discuss the effects of a strong external field on the optical transition between two electronic states of a solute immersed in a medium. The solute states may be weakly or quite strongly coupled to the medium. The electronic dephasing process is characterized via the power absorbed by the solute. The average absorbed power P¯(t) for...
Uploaded on: December 5, 2022 -
May 8, 2017 (v1)Publication
The tunneling of a particle between two states, as influenced by coupling the particle to an external field, is investigated. A spin-boson Hamiltonian is used to describe the tunnel system and its interaction with a medium and is augmented by a term coupling the dipole moment of the particle to the external field. A projection operator method...
Uploaded on: March 27, 2023 -
April 29, 2020 (v1)Publication
We show that a recent theory of strong field spectroscopy (SFS) [R. I. Cukier and M. Morillo, Phys. Rev. B 57, 6972 (1998), M. Morillo and R. I. Cukier, J. Chem. Phys. 110, 7966 (1999)] can be used to circumvent the effects of inhomogeneous broadening on this spectroscopy. In SFS, a strong external field is used to connect, with the transition...
Uploaded on: December 2, 2022 -
April 24, 2017 (v1)Publication
The probability of remaning in a given state is evaluated for a two-level system that can cross repeatedly and periodically as a function of a control parameter. The possibility of multiple Zener transitions between the surfaces introduces the issue of the appropriate initial conditions for each successive transition. We devise a simple model,...
Uploaded on: March 27, 2023 -
July 17, 2017 (v1)Publication
We analyze the noise-induced synchronization between a collective variable characterizing a complex system with a finite number of interacting bistable units and time-periodic driving forces. A random phase process associated to the collective stochastic variable is defined. Its average phase frequency and average phase diffusion are used to...
Uploaded on: December 2, 2022 -
July 19, 2017 (v1)Publication
An amenable, analytical two-state description of the nonlinear population dynamics of a noisy bistable system driven by a rectangular subthreshold signal is put forward. Explicit expressions for the driven population dynamics, the correlation function (its coherent and incoherent parts), the signal-to-noise ratio (SNR), and the stochastic...
Uploaded on: March 27, 2023 -
April 5, 2017 (v1)Publication
Work performed on a system in a microcanonical state by changes in a control parameter is characterized in terms of its statistics. The transition probabilities between eigenstates of the system Hamiltonians at the beginning and the end of the parameter change obey a detailed balance-like relation from which various forms of the microcanonical...
Uploaded on: December 4, 2022 -
June 15, 2020 (v1)Publication
We analyze the phenomenon of nonlinear stochastic resonance (SR) in noisy bistable systems driven by pulsed time periodic forces. The driving force contains, within each period, two pulses of equal constant amplitude and duration but opposite signs. Each pulse starts every half period and its duration is varied. For subthreshold amplitudes, we...
Uploaded on: December 4, 2022 -
January 9, 2023 (v1)Publication
In this paper we bring out the existence of a kind of synchronization associated with the size of a complex system. A dichotomic random jump process associated with the dynamics of an externally driven stochastic system with N coupled units is constructed. We define an output frequency and phase diffusion coefficient. System size...
Uploaded on: February 23, 2023 -
April 29, 2020 (v1)Publication
We consider the kinetics of electron transfer reactions in condensed media with different reorganization energies for the forward and backward processes. The starting point of our analysis is an extension of the well-known Zusman equations to the case of parabolic diabatic curves with different curvatures. A generalized master equation for the...
Uploaded on: March 27, 2023 -
July 17, 2017 (v1)Publication
The response of a nonlinear stochastic system driven by an external sinusoidal time-dependent force is studied by a variety of numerical and analytical approximations. The validity of linear response theory is put to a critical test by comparing its predictions with numerical solutions over an extended parameter regime of driving amplitudes and...
Uploaded on: March 27, 2023 -
June 3, 2020 (v1)Publication
The main objective of this work is to explore aspects of stochastic resonance (SR) in noisy bistable, symmetric systems driven by subthreshold periodic rectangular external signals possessing a large duty cycle of unity. Using a precise numerical solution of the Langevin equation, we carry out a detailed analysis of the behavior of the first...
Uploaded on: December 4, 2022 -
April 29, 2020 (v1)Publication
The structure of mixtures of dipolar hard sphere fluids with components of equal size but different dipole moments around a single ion is studied. The solvation energy and the polarization around the ion is obtained in the framework of the mean spherical approximation (MSA). Our theoretical results and the results of other workers are compared...
Uploaded on: March 27, 2023 -
April 29, 2020 (v1)Publication
We study the behavior of the reorganization energy for simple charge transfer reactions in mixtures of dipolar hard sphere fluids by Monte Carlo simulation. The static dielectric constants of the solvents are also obtained from the simulation. They are used as input in the reorganization energy expressions provided by the Marcus theory and the...
Uploaded on: March 27, 2023 -
April 29, 2020 (v1)Publication
Electron transfer in strongly coupled systems, appropriate to mixed-valence compounds, is studied to explore the competition between electronic coherence and dissipation. A set of stochastic equations is derived for a spin-boson Hamiltonian with large tunneling coupling matrix element ~adiabatic regime! and strong system-bath-coupling. The bath...
Uploaded on: March 27, 2023 -
July 13, 2017 (v1)Publication
We discuss the equilibrium of a single collective variable characterizing a finite set of coupled, noisy, bistable systems as the noise strength, the size and the coupling parameter are varied. We identify distinct regions in parameter space. Our finite size results indicate important qualitative differences with respect to those obtained in...
Uploaded on: March 27, 2023 -
July 18, 2017 (v1)Publication
We study, within the spin-boson dynamics, the synchronization of a quantum tunneling system with an external, time-periodic driving signal. As a main result, we find that at a sufficiently large system-bath coupling strength (i.e., for a friction strength α>1) the thermal noise plays a constructive role in yielding forced synchronization. This...
Uploaded on: December 5, 2022