Published October 8, 2023
| Version v1
Conference paper
Knowledge Base on Species Life Traits : A Spanish/French Plinian Core implementation use case
Contributors
Others:
- Patrimoine naturel (PatriNat) ; Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Office français de la biodiversité (OFB)
- Institut de Recherche pour le Développement (IRD)
- Global Biodiversity Information Facility France (GBIF France) ; Global Biodiversity Information Facility (GBIF)
- Muséum national d'Histoire naturelle (MNHN)
- Scalable and Pervasive softwARe and Knowledge Systems (Laboratoire I3S - SPARKS) ; Laboratoire d'Informatique, Signaux, et Systèmes de Sophia Antipolis (I3S) ; Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UCA)-Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UCA)
- Web-Instrumented Man-Machine Interactions, Communities and Semantics (WIMMICS) ; Inria Sophia Antipolis - Méditerranée (CRISAM) ; Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Scalable and Pervasive softwARe and Knowledge Systems (Laboratoire I3S - SPARKS) ; Laboratoire d'Informatique, Signaux, et Systèmes de Sophia Antipolis (I3S) ; Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UCA)-Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UCA)-Laboratoire d'Informatique, Signaux, et Systèmes de Sophia Antipolis (I3S) ; Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UCA)-Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Centre National de la Recherche Scientifique (CNRS)-Université Côte d'Azur (UCA)
- Universidad de Córdoba = University of Córdoba [Córdoba]
- Centre de Recherche en Paléontologie - Paris (CR2P) ; Muséum national d'Histoire naturelle (MNHN)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
- Institut de Systématique, Evolution, Biodiversité (ISYEB ) ; Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE) ; Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
- Centre d'Ecologie Fonctionnelle et Evolutive (CEFE) ; Université Paul-Valéry - Montpellier 3 (UPVM)-École Pratique des Hautes Études (EPHE) ; Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (INRAE)-Institut Agro Montpellier ; Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Université de Montpellier (UM)
- Education, Formation, Travail, Savoirs (EFTS) ; Université Toulouse - Jean Jaurès (UT2J) ; Université de Toulouse (UT)-Université de Toulouse (UT)-École Nationale Supérieure de Formation de l'Enseignement Agricole de Toulouse-Auzeville (ENSFEA)
Description
The French "Traits" working group was created in 2021 to support the development of the national knowledge base on species life traits managed by the PatriNat department*1, to identify and implement a suitable standard for managing and sharing species life traits (including interactions) at the national, then international, level. Its core members are part of several PatriNat teams (Species Knowledge, Dissemination & Mediation, Coordination of Information Systems), as well as other French research units*2 working on the topic of traits and ontologies. The Plinian Core (Plinian Core Task Group 2021) was first discussed in 2004 and its development began in 2005–2006 when the first version was deployed as a collaboration between InBIO*3 (Costa Rica) and GBIF Spain*4. It reuses and extends the Darwin Core vocabulary (Wieczorek et al. 2012, Darwin Core Maintenance Interest Group 2014) to describe different aspects of biological species information, that is, all kinds of properties or traits related to taxa, including biological and non-biological species traits. The Plinian Core was discussed with Dr Pando (convener of the TDWG Plinian Core Task Group*5) during one of the Traits working group meetings, and was found to be relevant to the French species life traits database (currently in development). The Traits working group future works will be following the example of the Plinian Core-based EIDOS database*6 (Spanish Ministry for the Ecological Transition), which allows for detailed species pages with distinct information sections (e.g., interactions, taxonomy, legal status, conservation). This collaboration resulted in a Capacity Enhancement Support Programme project submission (GBIF 2023) between French and Spanish partners, allowing for the consolidation of both the infrastructure and the sharing process of species life traits for taxa found on all French territories, as well as European Union territories. Additionally, this is an opportunity to provide information to GBIF (Global Biodiversity Information Facility) through a new update of the TAXREF (Gargominy 2022) national checklist, one of the core constituents of the GBIF Backbone Taxonomy (GBIF 2022). Species life traits and interactions will be added thanks to the new Plinian Core extension implemented on the GBIF Integrated Publishing Toolkit (IPT),*7 and an Atlas of Living Australia's architecture BIE (Biodiversity Information Explorer) module*8 developed by Costa Rica in the context of a Capacity Enhancement Support Programme (CESP) project carried out with SIBBR*9 (GBIF Brasil).
Abstract
International audienceAdditional details
Identifiers
- URL
- https://hal.science/hal-04198414
- URN
- urn:oai:HAL:hal-04198414v1
Origin repository
- Origin repository
- UNICA