Published 2011
| Version v1
Conference paper
Predicting the asymptotic dynamics of large biological networks by interconnections of Boolean modules
Creators
Contributors
Others:
- Biological control of artificial ecosystems (BIOCORE) ; Laboratoire d'océanographie de Villefranche (LOV) ; Observatoire océanologique de Villefranche-sur-mer (OOVM) ; Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Villefranche-sur-mer (OOVM) ; Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre Inria d'Université Côte d'Azur (CRISAM) ; Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de la Recherche Agronomique (INRA)
- Unité Mathématique Informatique et Génome (MIG) ; Institut National de la Recherche Agronomique (INRA)
Description
The dynamics of Boolean networks can be represented by asynchronous transition graphs, whose attractors describe the system's asymptotic behavior. This paper shows that the attractors of the feedback interconnection of two Boolean modules can be fully identified in terms of crossproducts of the attractors of each module. Based on this observation, a model reduction technique is proposed, aiming at analysing the asymptotic behavior of a high-dimensional network through the computation of the dynamics of two isolated smaller subnetworks. The method is applied to a large network which models cell-fate decision: all the attractors of the full network are exactly calculated by representing the network as an interconnection of two 3-input/3-output modules.
Abstract
présentation orale et texte intégralAbstract
International audienceAdditional details
Identifiers
- URL
- https://inria.hal.science/hal-00848407
- URN
- urn:oai:HAL:hal-00848407v1
Origin repository
- Origin repository
- UNICA