The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology

Description

The Infobiotics Workbench is an integrated software suite incorporating model specification, simulation, parameter optimization and model checking for Systems and Synthetic Biology. A modular model specification allows for straightforward creation of large-scale models containing many compartments and reactions. Models are simulated either using stochastic simulation or numerical integration, and visualized in time and space. Model parameters and structure can be optimized with evolutionary algorithms, and model properties calculated using probabilistic model checking.

Abstract

Kingdom's Engineering and Physical Sciences Research Council EP/J004111/1

Abstract

Kingdom's Engineering and Physical Sciences Research Council EP/I031642/1

Abstract

Biotechnology and Biological Sciences Research Council/United Kingdom BB/D019613/1

Abstract

Ministerio de Ciencia e Innovación TIN2009–13192

Additional details