Published October 2020
| Version v1
Journal article
Analytical and fast Fiber Orientation Distribution reconstruction in 3D-Polarized Light Imaging
Contributors
Others:
- Université Côte d'Azur (UCA)
- Computational Imaging of the Central Nervous System (ATHENA) ; Inria Sophia Antipolis - Méditerranée (CRISAM) ; Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)
- Institute of Neuroscience and Medicine [Jülich] (INM-1)
- Simulation Lab Neuroscience, Jülich Supercomputing Centre, Institute for Advanced Simulation [Jülich]
- ANR-13-MONU-0009,MOSIFAH,Modélisation et simulation multimodales et multiéchelles de l'architecture des fibres myocardiques du cœur humain(2013)
- European Project: 694665,H2020 ERC,ERC-2015-AdG,CoBCoM(2016)
Description
Three dimensional Polarized Light Imaging (3D-PLI) is an optical technique which allows mapping the spatial fiber architecture of fibrous postmortem tissues, at sub-millimeter resolutions. Here, we propose an analytical and fast approach to compute the fiber orientation distribution (FOD) from high-resolution vector data provided by 3D-PLI. The FOD is modeled as a sum of K orientations/Diracs on the unit sphere, described on a spherical harmonics basis and analytically computed using the spherical Fourier transform. Experiments are performed on rich synthetic data which simulate the geometry of the neuronal fibers and on human brain data. Results indicate the analytical FOD is computationally efficient and very fast, and has high angular precision and angular resolution. Furthermore, investigations on the right occipital lobe illustrate that our strategy of FOD computation enables the bridging of spatial scales from microscopic 3D-PLI information to macro-or mesoscopic dimensions of diffusion Magnetic Resonance Imaging (MRI), while being a means to evaluate prospective resolution limits for diffusion MRI to reconstruct regionspecific white matter tracts. These results demonstrate the interest and great potential of our analytical approach.
Abstract
International audienceAdditional details
Identifiers
- URL
- https://hal.inria.fr/hal-03078848
- URN
- urn:oai:HAL:hal-03078848v1
Origin repository
- Origin repository
- UNICA