May 27, 2021 (v1)
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Uploaded on: March 25, 2023
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May 23, 2019 (v1)Publication
The Infobiotics Workbench is an integrated software suite incorporating model specification, simulation, parameter optimization and model checking for Systems and Synthetic Biology. A modular model specification allows for straightforward creation of large-scale models containing many compartments and reactions. Models are simulated either...
Uploaded on: December 5, 2022 -
May 22, 2019 (v1)Publication
Cellular systems present a highly complex organization at different scales including the molecular, cellular and colony levels. The complexity at each one of these levels is tightly interrelated. Integrative systems biology aims to obtain a deeper understanding of cellular systems by focusing on the systemic and systematic integration of the...
Uploaded on: March 27, 2023 -
May 28, 2021 (v1)Publication
This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial discrete-stochastic P systems modelling framework. The Workbench incorporates three important features, simulation, model checking and optimisation. Its capability for building, analysing and optimising large spatially...
Uploaded on: March 25, 2023